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The best accounting apps for Shopify in 2024

Written by
Adam Sturrock
Published on
May 19, 2024

Shopify, a popular e-commerce platform hosting millions of active stores, has become a go-to choice for a diverse range of merchants. From small startups venturing into online selling to well-established brands, Shopify offers ease of use and scalability, catering to businesses of all sizes.

While Shopify provides a solid foundation for running an online store, the vast array of available apps can enhance and streamline various aspects of business operations. When it comes to managing finances and keeping track of transactions, the right accounting apps can make a significant difference in the efficiency and success of a Shopify store.

Whether you're just starting out in the e-commerce world or aiming to elevate your existing Shopify business in 2024, selecting the best accounting apps for your specific needs is crucial. The right tools can not only simplify your financial management but also provide valuable insights to help you make informed decisions for growth and profitability.

In this guide, we'll explore some of the top accounting apps tailored for Shopify users in 2024. These apps are designed to streamline your accounting processes, save you time, and empower you to take control of your finances effectively.

Shopify, the leading e-commerce platform, is home to over 2 million active stores, representing a substantial 20% of the global e-commerce market. Shopify is especially renowned for accommodating a diverse range of merchants, from newcomers setting up their first store to large enterprises and household brands. Shopify's accessibility for beginners and scalability for major businesses make it an ideal choice for many individuals and businesses.

The platform provides a wide array of free and paid templates, effectively reducing development costs. Additionally, there are specialized Shopify agencies and experts proficient in handling a wide variety of requirements, offering a valuable resource for those who might otherwise need to build a comprehensive in-house team.

However, with over 7,000 Shopify apps available, choosing the right accounting apps for your Shopify store is crucial for effective business growth and efficient operation. This selection process and the resulting accounting apps utilized can significantly impact the management and scalability of a Shopify store.

With this in mind, this guide has been crafted with beginner eCommerce store owners to ambitious and sophisticated Shopify businesses in mind. The Shopify accounting apps we've selected are also immensely beneficial for medium and large Shopify stores that aim to outshine their competitors.

Let's dive into our top accounting app recommendations for Shopify!

#1 Shopify App Award

1. Data Export IO: Reports

Data Export IO: ReportsData Export IO: ReportsPre-created reportsData Export IO: ReportsData Export IO: ReportsPre-created reports

Free plan available. Free trial available.

The transformative capabilities offered by this meticulous data consolidation tool can drastically enhance the management of your Shopify shop. The crux of this app lies in its highly intuitive and customizable reporting feature. Harness necessary data points such as sales, inventory, POS, refunds, orders, and customer data to gain actionable insights.

Modification has never been simpler, thanks to the intuitive Report Builder. Review live records, line item specifics, custom fields, and even distil data based on timeframes – weekly, monthly, or quarterly. Also, empowering your decision-making process with data aggregated from taxes or payouts.

The Scheduler feature adds to the convenience, allowing seamless data transmission via email, FTP, or Google sheets/drive, either on a basic or advanced schedule. The handy formatting options enable you to choose from Excel, CSV, or PDF, suiting your business's unique needs.

Perhaps the most noteworthy attribute of this app is its provision for free, expert-guided assistance. Aiding not just in the smooth implementation, this will ensure you capitalize on the app's robust features to derive the best value. The app's user-friendly interface and support for automation truly make it an indispensable addition to any Shopify merchant.

Data Export IO: Reports is developed and maintained by Estore Automate.

Data Export IO: Reports has an average rating of 5 out of 5 stars with 2185 reviews from Shopify stores.

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#2 Shopify App Award

2. QuickBooks Sync by Webgility

QuickBooks Sync by WebgilityQuickBooks Sync by WebgilityInventory Sync Shopify QuickBooksQuickBooks Sync by WebgilityQuickBooks Sync by WebgilityInventory Sync Shopify QuickBooks

From $59/month. Free trial available.

Streamline your accounting and inventory management with this powerful automation tool specifically designed for integration with QuickBooks Online. Seamlessly connect your online store, marketplaces, and over 50 other business apps directly to QuickBooks. With an automatic, real-time data transfer, this app simplifies complex ecommerce operations.

Once activated, this tool requires minimal intervention as it constantly stays in tune with your business pace. It is primed to automatically send orders, inventory, and payout data to QuickBooks, thereby dramatically reducing manual errors and substantially speeding up data reconciliation.

Furthermore, this app acts as an attentive business assistant, working tirelessly around the clock. Its auto-sync feature ensures all your sales avenues are synchronized, allowing you to expand into new sales channels without increasing your workload. This audit-ready app is not just an operational tool, but a strategic asset for ecommerce businesses seeking to optimize their back-end processes while maintaining accurate financial records.

QuickBooks Sync by Webgility is developed and maintained by Webgility.

QuickBooks Sync by Webgility has an average rating of 4.9 out of 5 stars with 899 reviews from Shopify stores.

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#3 Shopify App Award

3. Give & Grow Donations

Give & Grow DonationsGive & Grow DonationsRound-Up buttonGive & Grow DonationsGive & Grow DonationsRound-Up button

Free to install. Additional charges may apply.

Inject a dose of generosity into your business model with this exceptional app. Specializing in facilitating swift, secure donations to verified global nonprofits, this tool seamlessly integrates into your existing process. With this apparatus, you can show your customers you're about more than just profits and improve your brand loyalty simultaneously.

Offering myriad ways to give back, including round-up options at checkout or dedicating a portion of product proceeds, it’s a surefire way to leave a positive footprint. The robust and transparent donation tracking system lets you keep abreast of your charitable contributions with comprehensive reporting and disbursement functionalities.

Your trust and safety are of paramount importance. Rest assured, this top-tier app service is trusted by numerous elite global brands, nonprofits, and both Shopify & Shopify Plus Merchants. So, infuse your business with a heartening touch of philanthropy today.

Give & Grow Donations is developed and maintained by Pledge.

Give & Grow Donations has an average rating of 3.8 out of 5 stars with 73 reviews from Shopify stores.

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4. Webgility QB Desktop Sync

Webgility QB Desktop SyncWebgility QB Desktop SyncInventory ManagementWebgility QB Desktop SyncWebgility QB Desktop SyncInventory Management

From $139/month. Free trial available.

Streamline eCommerce accounting and inventory management with this advanced sync solution designed for QuickBooks Desktop integration. Get real-time synchronization of orders, inventory, taxes, fees, and shipping data directly into QuickBooks, all at the touch of a button. Rapid Shopify store connectivity eliminates the need for manual data entry, reducing the risk of human error and improving efficiency.

Benefit from convenient dropshipping automation that improves overall business operations. Enhance market reach by seamlessly transferring product listings and updating prices across numerous stores. This app also supports integration with over 50 other business applications, opening your eCommerce business to diversified potential growth avenues.

Adopt new sales channels with ease using this comprehensive solution, designed to optimize and simplify complex accounting tasks. Equip your eCommerce business with automated, accurate, and real-time financial data transfer. Make accounting roadblocks a thing of the past and focus on what matters- Sparks of creativity that drive wealth and innovation in your online store.

Webgility QB Desktop Sync is developed and maintained by Webgility.

Webgility QB Desktop Sync has an average rating of 4.9 out of 5 stars with 324 reviews from Shopify stores.

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5. lexoffice Integration

Webgility QB Desktop Synclexoffice Integrationlexoffice integration shopify automated accountingWebgility QB Desktop Synclexoffice Integrationlexoffice integration shopify automated accounting

$10/month. Free trial available.

Simplify your financial management process with a Shopify app that seamlessly integrates with lexoffice. Tailored to meet the needs of online businesses, this app automates the creation and emailing of lexoffice invoices and credit notes for orders. With a wide-ranging payment data synchronization feature, it not only supports popular payment platforms such as Paypal, Apple Pay, Amazon, Klarna, and more, but also updates Shopify payments effortlessly – ensuring a unified and smooth financial workflow.

Stay compliant with tax reforms and confidently manage orders from the One-Stop-Shop (OSS) system. This app takes care of booking OSS-relevant documents, making tax handling trouble-free. It also enables you to exclude sales tax when needed, reassuring accuracy and proficiency in tax management.

This integration tool goes far beyond financial transactions. Refunds or partial refunds are processed with ease and invoices are automatically updated, keeping a clear and concise record. Have past orders you need to incorporate? Import them with a simple click of a button.

Dress your invoices how you like them – the individual invoice layout feature, inclusive of a layout designer, lets you create professional and personalized invoices. Even shop purchases done through Point-of-Sale (POS) can be well-managed, making it an all-inclusive app for your financial operations. Integrate your Shopify store with lexoffice today – streamline operations, reduce manual work, and elevate your business process efficiency.

lexoffice Integration is developed and maintained by Eshop Guide.

lexoffice Integration has an average rating of 4.8 out of 5 stars with 284 reviews from Shopify stores.

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We hope you found this guide on the top accounting apps for Shopify useful.

Did we miss an app you think should be included in this guide, please let us know!

Top Shopify accounting apps FAQ

Which accounting apps do I need for my Shopify store?

You’ll want to take advantage of the many accounting apps and integrations available to make your Shopify store the best it can be. Every accounting app highlighted in this article can help take your Shopify store to the next level! With that said, if you can't find what you're looking for in this guide, we recommend checking our comprehensive list of every Shopify accounting app!

What is the best accounting app for Shopify?

The Shopify App Store is always adding new apps, but by analyzing merchant reviews, average ratings, estimated install counts, pricing and other signals we've identified that Data Export IO: Reports is one of the top Shopify accounting apps available for merchants in 2024.

With that said, it’s not always the best idea to just go for the most popular app or our recommendations. Always look at how many Shopify stars the app has and what the reviews are saying about the app itself. Where possible, we highly recommend testing apps you are considering by leveraging free trials before commiting to any fixed monthly subscription costs.

Why do I need to install a Shopify accounting app?

Whilst Shopify comes with a broad range of features and capabilities out of the box, many accounting apps go above and beyond what Shopify can provide. Every store has unique requirements and a diverse range of apps are available to meet these needs.

How many accounting apps are recommended for Shopify?

We recommend including atleast one accounting app for your Shopify store if this type of app would be beneficial for your store. There are a lot of free options out there and some great accounting apps that will help you run your business as smoothly as possible.

Can I build my own custom accounting app for Shopify?

The short answer is yes ofcourse! Shopify provides a lot of great documentation to build accounting apps.

The longer answer is that you should weigh up the upfront time, resources and costs of building a custom apps vs finding a accounting app that handles the majority of your requirements for free or for a low monthly fee.

Ofcourse if you can't find a suitable accounting Shopify app to meet your needs then it's definitely worth investigating what it would take to build the app of your dreams!


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